DeepEn Onein vivo
Microendoscopy Platform

Powerful bioimaging through a single fibre endoscope.

DeepEn One
Microendoscopy Platform

Single-Fibre Endoscope for High-Resolution in vivo Bioimaging

DeepEn One™ is a cutting-edge microendoscopy platform that delivers powerful in vivo bioimaging through a single multimode fibre endoscope (⌀100 μm). Combining laser-scanning fluorescence microscopy with holographic wavefront control, it enables researchers to probe deep into the living brain—reaching regions such as the amygdala, VTA, medial septum, brainstem, or spinal cord—while minimizing structural damage and preserving physiological function.

With submicron lateral resolution and a 110 µm diameter field of view, DeepEn One provides random-access imaging and real-time focus adjustment. Its ultra-fast acquisition rate of up to 25,000 focal points per second makes it ideally suited for fast neuronal activity recording, including studies based on voltage imaging.

Workflow with DeepEn One™

Probe mounting

Attach the hair-thin probe to the DeepEn One core. A self-aligning fibre connector ensures easy mounting and precise, repeatable positioning of the probe tip.

Calibration

Before each imaging session, DeepEn One™ automatically aligns the fibre tip with the calibration module.
The software guides the user through the process, which takes approximately 10 minutes.

Navigation

Using a joystick or GUI, the fibre is guided to the craniotomy and inserted into the target region.
Additional navigation module can be used for high-resolution visualisation, enabling precise positioning and alignment with brain-atlas references.

Imaging

After calibration, the focal point scans across the selected plane near the fibre tip, exciting fluorescence, which is collected through the same fibre.
Scanning parameters – sampling density, focal distance, and random-access scanning, are adjustable via the GUI.

Key Areas of Research

  • Fundamental neuroscience: neuronal plasticity, connectivity mapping, calcium and voltage imaging, microcircuit analysis
  • Disease research: Alzheimer’s, Parkinson’s, psychiatric disorders (depression, anxiety, schizophrenia), addiction, chronic pain, epilepsy, sleep and arousal studies.
  • Biomedical discovery & preclinical research: drug testing, mechanism-of-action analysis, and biomarker validation.

Why DeepEn One™?

This innovative single-fibre endoscope provides laboratories with a compact, high-performance platform for exploring brain function and cellular processes at unprecedented depth and resolution—bridging fundamental discovery and translational neuroscience.

Minimal Invasiveness & Deep Penetration

The stability of our 100-µm-probe allows for smooth insertion into deep brain regions with minimal effect on the tissue or the function.

Postmortem tissue analysis shows that the 110-µm-DeepEn-probe causes significantly less insertion-induced inflammation and tissue damage. Even compared to a standard 200 µm optogenetic or photometry probe, the DeepEn fibre exhibits minimal impact on brain tissue.

DeepEn One™ enables high-resolution imaging at any depth within the brain, reaching even the deepest and most sensitive neural structures.


Immunostained brain sections show reduced activation of astrocytes (GFAP, green) and microglia (IBA1, red) around the DeepEn probe track compared to conventional probes, indicating lower tissue response to mechanical damage.

High spatial and temporal resolution

By using holographic control of light in multimode fibres, DeepEn One™ enables imagng at any depth across the brain, with the ability to switch between high spatial and high temporal resolution modes during a single session.

High Spatial Resolution – Seeing the Brain in Unprecedented Detail


DeepEn One™ delivers exceptional spatial resolution, enabling precise imaging of neuronal structures deep within living brain tissue. By combining advanced holographic wavefront shaping with hair-thin optical probes, it resolves fine subcellular features at any depth across the brain.
This allows researchers to visualize complex neuronal networks and synaptic dynamics, unlocking new possibilities for in-vivo neuroscience.

High Temporal Resolution – Recording neuronal activity


DeepEn One™ delivers high temporal resolution imaging, capturing rapid neuronal dynamics in real time. Leveraging fast holographic modulation, the system enables millisecond-scale monitoring of neuronal activity deep within scattering tissue.
This performance allows researchers to record  Calcium and even Voltage signals, providing unprecedented insight into the neuronal signalling, network dynamics, and functional connectivity deep in living brain.

Modalities

Multicolour operation

Features simultaneous recording and visualization of spectrally-separated fluorophores, excitable at the working wavelengths.

Adjustable Focal distance

Provides dynamic refocusing over a 0–50 µm depth range from the probe facet, enabling volumetric imaging.

Random access scanning

Scans up to 24,000 focal points per second, enabling rapid, user-defined sampling anywhere in the field of view without motion delays.

Structured illumination:

Incorporates patterned illumination of user-defined regions to enhance data acquisition rates up to the kilohertz range.

Technical specifications:

SpecificationDescription
Fibre size / field of view (FOV)∅ 110 µm / ∅ 100 µm
Excitation wavelengthBlue 488 nm or Green 532 nm
(450, 471, 488, 515, 532, 561 nm)
two-colour excitation possible
Submicron optical resolution
Equivalent to 20× microscope objective
Focal plane adjustmentUp to 50 µm from the fibre facet
Scanning rate24,000 scanned points per second
– Full FOV: 0.25 fps
– 1000 points: 25 Hz
– 25 points: 1 kHz
Pixel acquisition time adjustable (pixel dwell time)40 µs – 10 ms, pixel-based averaging
Dr. med. Hana Cizmarova

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Contact Hana